Thankfully it's called a rookie now and it will be forever known to future collectors as such. As information comes to light, many collectors embrace the new knowledge and recalibrate accordingly. Being open to change is good; it helps the hobby evolve. But the good thing about collecting is that no one is forced to collect a card they don't like.
End of the day, however, whatever the card was labeled 10-12 years ago is as irrelevant as any card's price 10-12 years ago. In 2014 and beyond, it is known to be his first card in a major league uniform, which is to the majority of collectors his rookie card. Years ago doctors used leeches; not many folks long to return to prior dark ages where ignorance reigned